Genomic Location: not available for this species
NR annotation: CAB4014591.1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4014591.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006465 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03734 all species → | YkuD | L,D-transpeptidase catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005490 all species → | Domain | L,D-transpeptidase catalytic domain | Interproscan |
| IPR038063 all species → | Homologous_superfamily | L,D-transpeptidase catalytic domain-like | Interproscan |
CAB4014591.1 in Paramuricea clavata.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
CAB4014591.1.Transcript abundance of CAB4014591.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 99.08 | 279.06 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 64.00 | 98.17 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 56.47 | 183.67 | |
| apical branchlet · Control at T0 | 4 | 3 | 73.30 | 147.22 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
