Genomic Location: not available for this species
NR annotation: CAB4014604.1, S-adenosylmethionine synthase-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4014604.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P50304 | S-adenosylmethionine synthase OS=Ascobolus immersus OX=5191 PE=3 SV=1 |
| P31153 | S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens OX=9606 GN=MAT2A PE=1 SV=1 |
| Q4R924 | S-adenosylmethionine synthase isoform type-2 OS=Macaca fascicularis OX=9541 GN=MAT2A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001670 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00438 all species → | S-AdoMet_synt_N | S-adenosylmethionine synthetase, N-terminal domain | Domain | Interproscan |
| PF02772 all species → | S-AdoMet_synt_M | S-adenosylmethionine synthetase, central domain | Domain | Interproscan |
| PF02773 all species → | S-AdoMet_synt_C | S-adenosylmethionine synthetase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022631 all species → | Conserved_site | S-adenosylmethionine synthetase, conserved site | Interproscan |
| IPR002133 all species → | Family | S-adenosylmethionine synthetase | Interproscan |
| IPR022636 all species → | Homologous_superfamily | S-adenosylmethionine synthetase superfamily | Interproscan |
| IPR022628 all species → | Domain | S-adenosylmethionine synthetase, N-terminal | Interproscan |
| IPR022629 all species → | Domain | S-adenosylmethionine synthetase, central domain | Interproscan |
| IPR022630 all species → | Domain | S-adenosylmethionine synthetase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11964 all species → | S-ADENOSYLMETHIONINE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004478 all species → | Molecular Function | methionine adenosyltransferase activity | Interproscan |
| GO:0006556 all species → | Biological Process | S-adenosylmethionine biosynthetic process | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00789 | metK, MAT; S-adenosylmethionine synthetase | EC:2.5.1.6 | Biosynthesis of various plant secondary metabolites | ko00999 | deepkoala |
Transcript abundance of CAB4014604.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 1 | 0.06 | 0.35 | |
| apical branchlet · Temperature treatment at T0 | 6 | 2 | 0.32 | 1.40 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.96 | 3.83 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
