Genomic Location: not available for this species
NR annotation: CAB4015255.1, cleavage and polyadenylation specificity factor subunit 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4015255.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A0A0R4IC37 | Cleavage and polyadenylation specificity factor subunit 1 OS=Danio rerio OX=7955 GN=cpsf1 PE=3 SV=2 |
| Q9EPU4 | Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=10090 GN=Cpsf1 PE=1 SV=1 |
| Q10569 | Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 GN=CPSF1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002447 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DDB1 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10433 all species → | MMS1_N | Mono-functional DNA-alkylating methyl methanesulfonate N-term | Repeat | Interproscan |
| PF03178 all species → | CPSF_A | CPSF A subunit region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR050358 all species → | Family | RSE1/DDB1/CFT1/CPSF1 | Interproscan |
| IPR018846 all species → | Domain | Cleavage/polyadenylation specificity factor, A subunit, N-terminal | Interproscan |
| IPR004871 all species → | Domain | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10644 all species → | DNA REPAIR/RNA PROCESSING CPSF FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005847 all species → | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14401 | CPSF1, CFT1; cleavage and polyadenylation specificity factor subunit 1 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of CAB4015255.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 6.86 | 21.80 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 3.41 | 10.11 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.11 | 0.55 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.50 | 2.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
