Genomic Location: not available for this species
NR annotation: CAB4015438.1, Chitin synthase 6, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4015438.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| G5EBQ8 | Chitin synthase chs-2 OS=Caenorhabditis elegans OX=6239 GN=chs-2 PE=1 SV=1 |
| G5ECD6 | Chitin synthase chs-1 OS=Caenorhabditis elegans OX=6239 GN=chs-1 PE=1 SV=1 |
| Q8T5G8 | Chitin synthase OS=Meloidogyne artiellia OX=42426 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001011 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03142 all species → | Chitin_synth_2 | Chitin synthase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR004835 all species → | Family | Chitin synthase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22914 all species → | CHITIN SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004100 all species → | Molecular Function | chitin synthase activity | Interproscan |
| GO:0006038 all species → | Biological Process | obsolete cell wall chitin biosynthetic process | Interproscan |
| GO:0016758 all species → | Molecular Function | hexosyltransferase activity | Interproscan |
| GO:0030428 all species → | Cellular Component | cell septum | Interproscan |
| GO:0071944 all species → | Cellular Component | cell periphery | Interproscan |
CAB4015438.1.Transcript abundance of CAB4015438.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
