Genomic Location: not available for this species
NR annotation: CAB4015648.1, adenylosuccinate synthetase isozyme 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4015648.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B5X2Z0 | Adenylosuccinate synthetase isozyme 1 A OS=Salmo salar OX=8030 GN=adss1a PE=2 SV=1 |
| Q6NSN5 | Adenylosuccinate synthetase isozyme 1 OS=Danio rerio OX=7955 GN=adss1 PE=1 SV=1 |
| A4Z6H1 | Adenylosuccinate synthetase isozyme 2 OS=Sus scrofa OX=9823 GN=ADSS2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003486 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00709 all species → | Adenylsucc_synt | Adenylosuccinate synthetase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033128 all species → | Active_site | Adenylosuccinate synthase, active site | Interproscan |
| IPR001114 all species → | Family | Adenylosuccinate synthetase | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR042110 all species → | Homologous_superfamily | Adenylosuccinate synthetase, domain 2 | Interproscan |
| IPR042109 all species → | Homologous_superfamily | Adenylosuccinate synthetase, domain 1 | Interproscan |
| IPR018220 all species → | Binding_site | Adenylosuccinate synthase, GTP-binding site | Interproscan |
| IPR042111 all species → | Homologous_superfamily | Adenylosuccinate synthetase, domain 3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11846 all species → | ADENYLOSUCCINATE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004019 all species → | Molecular Function | adenylosuccinate synthase activity | Interproscan |
| GO:0006164 all species → | Biological Process | purine nucleotide biosynthetic process | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0044208 all species → | Biological Process | 'de novo' AMP biosynthetic process | Interproscan |
| GO:0046040 all species → | Biological Process | IMP metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01939 | purA, ADSS; adenylosuccinate synthase | EC:6.3.4.4 | Alanine, aspartate and glutamate metabolism | ko00250 | deepkoala |
Transcript abundance of CAB4015648.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
