Genomic Location: not available for this species
NR annotation: CAB4015732.1, reticulon-1-A-like isoform X3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4015732.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6IFY7 | Reticulon-1-A OS=Xenopus laevis OX=8355 GN=rtn1-a PE=2 SV=1 |
| Q08D83 | Reticulon-3 OS=Bos taurus OX=9913 GN=RTN3 PE=2 SV=1 |
| Q5RBL9 | Reticulon-3 OS=Pongo abelii OX=9601 GN=RTN3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002033 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02453 all species → | Reticulon | Reticulon | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003388 all species → | Domain | Reticulon | Interproscan |
| IPR046964 all species → | Family | Reticulon 1-4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45799 all species → | RETICULON-LIKE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005789 all species → | Cellular Component | endoplasmic reticulum membrane | Interproscan |
| GO:0030424 all species → | Cellular Component | axon | Interproscan |
CAB4015732.1.Transcript abundance of CAB4015732.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
