Genomic Location: not available for this species
NR annotation: CAB4015740.1, E3 ubiquitin- ligase RNF130 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4015740.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8VEM1 | E3 ubiquitin-protein ligase RNF130 OS=Mus musculus OX=10090 GN=Rnf130 PE=2 SV=1 |
| Q6Y290 | E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus OX=10116 GN=Rnf130 PE=1 SV=1 |
| Q86XS8 | E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens OX=9606 GN=RNF130 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007045 (this species only) |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13639 all species → | zf-RING_2 | Ring finger domain | Domain | Interproscan |
| PF02225 all species → | PA | PA domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046450 all species → | Homologous_superfamily | PA domain superfamily | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR003137 all species → | Domain | PA domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46539 all species → | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | Interproscan |
CAB4015740.1. This gene does have a gene model — the search simply returned no hit.CAB4015740.1.Transcript abundance of CAB4015740.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 9.39 | 26.82 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 9.13 | 14.22 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 16.76 | 33.53 | |
| apical branchlet · Control at T0 | 4 | 3 | 8.24 | 17.88 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
