Genomic Location: not available for this species
NR annotation: CAB4016038.1, tryptophan 2,3-dioxygenase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4016038.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q95NN1 | Tryptophan 2,3-dioxygenase OS=Tribolium castaneum OX=7070 PE=2 SV=1 |
| B4MSH7 | Tryptophan 2,3-dioxygenase OS=Drosophila willistoni OX=7260 GN=v PE=3 SV=1 |
| B3MQP7 | Tryptophan 2,3-dioxygenase OS=Drosophila ananassae OX=7217 GN=v PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003312 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03301 all species → | Trp_dioxygenase | Tryptophan 2,3-dioxygenase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004981 all species → | Family | Tryptophan 2,3-dioxygenase | Interproscan |
| IPR037217 all species → | Homologous_superfamily | Tryptophan/Indoleamine 2,3-dioxygenase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10138 all species → | TRYPTOPHAN 2,3-DIOXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004833 all species → | Molecular Function | tryptophan 2,3-dioxygenase activity | Interproscan |
| GO:0019441 all species → | Biological Process | tryptophan catabolic process to kynurenine | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0019442 all species → | Biological Process | tryptophan catabolic process to acetyl-CoA | Interproscan |
CAB4016038.1.Transcript abundance of CAB4016038.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
