Gene detail

Detailed information of CAB4016271.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4016271.1, activator of 90 kDa heat shock ATPase homolog 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4016271.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BK64	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Mus musculus OX=10090 GN=Ahsa1 PE=1 SV=2
Q8N9S3	Activator of 90 kDa heat shock protein ATPase homolog 2 OS=Mus musculus OX=10090 GN=Ahsa2 PE=1 SV=2
O95433	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens OX=9606 GN=AHSA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09229 all species →	Aha1_N	Activator of Hsp90 ATPase, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036338 all species →	Homologous_superfamily	Activator of Hsp90 ATPase, Aha1	Interproscan
IPR015310 all species →	Domain	Activator of Hsp90 ATPase AHSA1-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13009 all species →	HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0032781 all species →	Biological Process	positive regulation of ATP-dependent activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4016271.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4016271.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
apical branchlet · Control at T25	6	0	0.00	0.00
apical branchlet · Temperature treatment at T0	6	0	0.00	0.00
apical branchlet · Temperature treatment at T25	5	0	0.00	0.00
apical branchlet · Control at T0	4	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.