Genomic Location: not available for this species
NR annotation: CAB4016662.1, U3 small nucleolar RNA-associated 18 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4016662.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5SSI6 | U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Utp18 PE=1 SV=1 |
| Q9Y5J1 | U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=UTP18 PE=1 SV=3 |
| Q9FMU5 | U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005814 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF05131 all species → | Pep3_Vps18 | Pep3/Vps18/deep orange beta-propeller domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR007810 all species → | Domain | Pep3/Vps18/deep orange, beta-propeller domain | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR045161 all species → | Family | U3 small nucleolar RNA-associated protein 18 | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18359 all species → | WD-REPEAT PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0034388 all species → | Cellular Component | Pwp2p-containing subcomplex of 90S preribosome | Interproscan |
CAB4016662.1.Transcript abundance of CAB4016662.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 4.20 | 13.61 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 2.79 | 13.13 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 1.52 | 3.96 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.63 | 2.54 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
