Genomic Location: not available for this species
NR annotation: CAB4016888.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4016888.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5ZKD7 | Putative helicase MOV-10 OS=Gallus gallus OX=9031 GN=MOV10 PE=2 SV=1 |
| P23249 | Putative helicase MOV-10 OS=Mus musculus OX=10090 GN=Mov10 PE=1 SV=2 |
| Q1LXK4 | Putative helicase mov-10-B.1 OS=Danio rerio OX=7955 GN=mov10b.1 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000828 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13086 all species → | AAA_11 | AAA domain | Domain | Interproscan |
| PF21634 all species → | MOV-10_beta-barrel | Helicase MOV-10, beta-barrel domain | Domain | Interproscan |
| PF13087 all species → | AAA_12 | AAA domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047187 all species → | Domain | Upf1-like, C-terminal helicase domain | Interproscan |
| IPR041677 all species → | Domain | DNA2/NAM7 helicase, helicase domain | Interproscan |
| IPR049080 all species → | Domain | Helicase MOV-10-like, beta-barrel domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR026122 all species → | Domain | Helicase MOV-10/SDE3, DEXXQ/H-box helicase domain | Interproscan |
| IPR041679 all species → | Domain | DNA2/NAM7 helicase-like, C-terminal | Interproscan |
| IPR045055 all species → | Family | DNA2/NAM7-like helicase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10887 all species → | DNA2/NAM7 HELICASE FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004386 all species → | Molecular Function | helicase activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0032574 all species → | Molecular Function | 5'-3' RNA helicase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0035194 all species → | Biological Process | regulatory ncRNA-mediated post-transcriptional gene silencing | Interproscan |
| GO:0043186 all species → | Cellular Component | P granule | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18422 | MOV10; helicase MOV-10 | EC:5.6.2.5 | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4016888.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
