Genomic Location: not available for this species
NR annotation: CAB4016924.1, DNA-directed RNA polymerase I subunit RPA43 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4016924.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3B726 | DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens OX=9606 GN=POLR1F PE=1 SV=1 |
| Q6PHG8 | DNA-directed RNA polymerase I subunit RPA43 OS=Danio rerio OX=7955 GN=polr1f PE=2 SV=2 |
| Q78WZ7 | DNA-directed RNA polymerase I subunit RPA43 OS=Mus musculus OX=10090 GN=Polr1f PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009693 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17875 all species → | RPA43_OB | RPA43 OB domain in RNA Pol I | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041178 all species → | Domain | RPA43, OB domain | Interproscan |
| IPR036898 all species → | Homologous_superfamily | RNA polymerase Rpb7-like, N-terminal domain superfamily | Interproscan |
| IPR045113 all species → | Family | RNA polymerase subunit Rpb7-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12709 all species → | DNA-DIRECTED RNA POLYMERASE II, III | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005736 all species → | Cellular Component | RNA polymerase I complex | Interproscan |
| GO:0006352 all species → | Biological Process | DNA-templated transcription initiation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03004 | RPA43, POLR1F, TWISTNB; DNA-directed RNA polymerase I subunit RPA43 | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of CAB4016924.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
