Genomic Location: not available for this species
NR annotation: CAB4017301.1, pachytene checkpoint 2 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4017301.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| E1C6Q1 | Pachytene checkpoint protein 2 homolog OS=Gallus gallus OX=9031 GN=TRIP13 PE=3 SV=1 |
| Q5XHZ9 | Pachytene checkpoint protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Trip13 PE=2 SV=1 |
| Q6P4W8 | Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis OX=8364 GN=trip13 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005062 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00004 all species → | AAA | ATPase family associated with various cellular activities (AAA) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003959 all species → | Domain | ATPase, AAA-type, core | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001270 all species → | Family | ClpA/B family | Interproscan |
| IPR044539 all species → | Family | Pachytene checkpoint protein 2-like | Interproscan |
| IPR003960 all species → | Conserved_site | ATPase, AAA-type, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45991 all species → | PACHYTENE CHECKPOINT PROTEIN 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005694 all species → | Cellular Component | chromosome | Interproscan |
| GO:0007131 all species → | Biological Process | reciprocal meiotic recombination | Interproscan |
| GO:0051598 all species → | Biological Process | meiotic recombination checkpoint signaling | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22399 | TRIP13; pachytene checkpoint protein 2 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4017301.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 16.54 | 50.01 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 17.12 | 72.28 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.15 | 0.73 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.48 | 1.91 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
