Genomic Location: not available for this species
NR annotation: CAB4017369.1, 30S ribosomal S12 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4017369.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B3E073 | Small ribosomal subunit protein uS12 OS=Methylacidiphilum infernorum (isolate V4) OX=481448 GN=rpsL PE=3 SV=1 |
| A8Z664 | Small ribosomal subunit protein uS12 OS=Karelsulcia muelleri (strain GWSS) OX=444179 GN=rpsL PE=3 SV=1 |
| C5CGR9 | Small ribosomal subunit protein uS12 OS=Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1) OX=521045 GN=rpsL PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007343 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00164 all species → | Ribosom_S12_S23 | Ribosomal protein S12/S23 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006032 all species → | Family | Small ribosomal subunit protein uS12 | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR005679 all species → | Family | Ribosomal protein uS12, bacterial-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11652 all species → | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0015935 all species → | Cellular Component | small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02950 | RP-S12, MRPS12, rpsL; small subunit ribosomal protein S12 | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of CAB4017369.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
