Genomic Location: not available for this species
NR annotation: CAB4017780.1, actin-binding LIM 1 isoform X21, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4017780.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6KC51 | Actin-binding LIM protein 2 OS=Rattus norvegicus OX=10116 GN=Ablim2 PE=1 SV=1 |
| Q6H8Q1 | Actin-binding LIM protein 2 OS=Homo sapiens OX=9606 GN=ABLIM2 PE=1 SV=2 |
| Q8BL65 | Actin-binding LIM protein 2 OS=Mus musculus OX=10090 GN=Ablim2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005920 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00412 all species → | LIM | LIM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051618 all species → | Family | Actin-binding LIM | Interproscan |
| IPR001781 all species → | Domain | Zinc finger, LIM-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24213 all species → | ACTIN-BINDING LIM PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015629 all species → | Cellular Component | actin cytoskeleton | Interproscan |
| GO:0030032 all species → | Biological Process | lamellipodium assembly | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
CAB4017780.1.Transcript abundance of CAB4017780.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
