Genomic Location: not available for this species
NR annotation: CAB4017877.1, AP-3 complex subunit delta-1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4017877.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q865S1 | AP-3 complex subunit delta-1 OS=Bos taurus OX=9913 GN=AP3D1 PE=1 SV=2 |
| O54774 | AP-3 complex subunit delta-1 OS=Mus musculus OX=10090 GN=Ap3d1 PE=1 SV=1 |
| O14617 | AP-3 complex subunit delta-1 OS=Homo sapiens OX=9606 GN=AP3D1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003931 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01602 all species → | Adaptin_N | Adaptin N terminal region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR017105 all species → | Family | Adaptor protein complex AP-3, delta subunit | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR002553 all species → | Domain | Clathrin/coatomer adaptor, adaptin-like, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22781 all species → | DELTA ADAPTIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006623 all species → | Biological Process | protein targeting to vacuole | Interproscan |
| GO:0006896 all species → | Biological Process | Golgi to vacuole transport | Interproscan |
| GO:0010008 all species → | Cellular Component | endosome membrane | Interproscan |
| GO:0015031 all species → | Biological Process | protein transport | Interproscan |
| GO:0030123 all species → | Cellular Component | AP-3 adaptor complex | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030117 all species → | Cellular Component | membrane coat | Interproscan |
CAB4017877.1.Transcript abundance of CAB4017877.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
