Gene detail

Detailed information of CAB4018053.1 in Paramuricea clavata

Genomic Location: :...
NR annotation: CAB4018053.1, Transcription elongation factor SPT6 [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q7KZ85	Transcription elongation factor SPT6 OS=Homo sapiens OX=9606 GN=SUPT6H PE=1 SV=2
Q62383	Transcription elongation factor SPT6 OS=Mus musculus OX=10090 GN=Supt6h PE=1 SV=2
Q8UVK2	Transcription elongation factor SPT6 OS=Danio rerio OX=7955 GN=supt6h PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14641	HTH_44	Helix-turn-helix DNA-binding domain of SPT6	Domain	Interproscan
PF14632	SPT6_acidic	Acidic N-terminal SPT6	Family	Interproscan
PF14635	HHH_7	Helix-hairpin-helix motif	Domain	Interproscan
PF14639	YqgF	Holliday-junction resolvase-like of SPT6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028088	Domain	Helix-turn-helix DNA-binding domain of Spt6	Interproscan
IPR028083	Domain	Spt6 acidic, N-terminal domain	Interproscan
IPR017072	Family	Transcription elongation factor Spt6	Interproscan
IPR037027	Homologous_superfamily	YqgF/RNase H-like domain superfamily	Interproscan
IPR032706	Domain	Transcription elongation factor Spt6, helix-hairpin-helix motif	Interproscan
IPR023319	Homologous_superfamily	Tex-like protein, HTH domain superfamily	Interproscan
IPR028231	Domain	Transcription elongation factor Spt6, YqgF domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023323	Homologous_superfamily	Tex-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10145	TRANSCRIPTION ELONGATION FACTOR SPT6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023	Cellular Component	transcription elongation factor complex	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0034728	Biological Process	nucleosome organization	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140673	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan