Genomic Location: not available for this species
NR annotation: CAB4018074.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4018074.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9H307 | Pinin OS=Homo sapiens OX=9606 GN=PNN PE=1 SV=5 |
| Q5R5X0 | Pinin OS=Pongo abelii OX=9601 GN=PNN PE=2 SV=1 |
| O35691 | Pinin OS=Mus musculus OX=10090 GN=Pnn PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006944 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04696 all species → | Pinin_SDK_memA | pinin/SDK/memA/ protein conserved region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039853 all species → | Family | Pinin | Interproscan |
| IPR006786 all species → | Domain | Pinin/SDK/MemA protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12707 all species → | PINN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0071013 all species → | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13114 | PNN; pinin | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of CAB4018074.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
