Genomic Location: not available for this species
NR annotation: CAB4018548.1, argonaute-2-like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4018548.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6QME8 | Protein argonaute-2 OS=Bos taurus OX=9913 GN=AGO2 PE=2 SV=1 |
| Q9UKV8 | Protein argonaute-2 OS=Homo sapiens OX=9606 GN=AGO2 PE=1 SV=3 |
| Q8CJG0 | Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000825 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02171 all species → | Piwi | Piwi domain | Family | Interproscan |
| PF16486 all species → | ArgoN | N-terminal domain of argonaute | Domain | Interproscan |
| PF02170 all species → | PAZ | PAZ domain | Domain | Interproscan |
| PF08699 all species → | ArgoL1 | Argonaute linker 1 domain | Domain | Interproscan |
| PF16488 all species → | ArgoL2 | Argonaute linker 2 domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003165 all species → | Domain | Piwi domain | Interproscan |
| IPR003100 all species → | Domain | PAZ domain | Interproscan |
| IPR014811 all species → | Domain | Argonaute, linker 1 domain | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR036085 all species → | Homologous_superfamily | PAZ domain superfamily | Interproscan |
| IPR032474 all species → | Domain | Protein argonaute, N-terminal | Interproscan |
| IPR032472 all species → | Domain | Argonaute linker 2 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22891 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003727 all species → | Molecular Function | single-stranded RNA binding | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0016246 all species → | Biological Process | regulatory ncRNA-mediated post-transcriptional gene silencing | Interproscan |
| GO:0035198 all species → | Molecular Function | miRNA binding | Interproscan |
CAB4018548.1.Transcript abundance of CAB4018548.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
