Genomic Location: not available for this species
NR annotation: CAB4018587.1, probable cytokinin riboside 5 -monophosphate phosphoribohydrolase LOG4 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4018589.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q851C7 | Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL4 PE=3 SV=1 |
| B9F166 | Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL2 PE=3 SV=1 |
| Q8LBB7 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana OX=3702 GN=LOG5 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005834 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03641 all species → | Lysine_decarbox | Possible lysine decarboxylase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005269 all species → | Family | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG | Interproscan |
| IPR031100 all species → | Family | LOG family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31223 all species → | LOG FAMILY PROTEIN YJL055W | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0009691 all species → | Biological Process | cytokinin biosynthetic process | Interproscan |
| GO:0016799 all species → | Molecular Function | hydrolase activity, hydrolyzing N-glycosyl compounds | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22522 | LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase | EC:3.2.2.- | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of CAB4018589.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
