Genomic Location: not available for this species
NR annotation: CAB4018725.1, Red [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4018725.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9Z1M8 | Protein Red OS=Mus musculus OX=10090 GN=Ik PE=1 SV=2 |
| Q66HG8 | Protein Red OS=Rattus norvegicus OX=10116 GN=Ik PE=1 SV=1 |
| Q5NVI3 | Protein Red OS=Pongo abelii OX=9601 GN=IK PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005282 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07808 all species → | RED_N | RED-like protein N-terminal region | Family | Interproscan |
| PF07807 all species → | RED_C | RED-like protein C-terminal region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012916 all species → | Domain | RED-like, N-terminal | Interproscan |
| IPR039896 all species → | Family | Protein Red-like | Interproscan |
| IPR012492 all species → | Domain | Protein RED, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12765 all species → | RED PROTEIN IK FACTOR CYTOKINE IK | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13109 | IK, RED, RER; IK cytokine | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of CAB4018725.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
