Genomic Location: not available for this species
NR annotation: CAB4018780.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4018780.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P11584 | Integrin beta-PS OS=Drosophila melanogaster OX=7227 GN=mys PE=1 SV=3 |
| Q27874 | Integrin beta pat-3 OS=Caenorhabditis elegans OX=6239 GN=pat-3 PE=1 SV=1 |
| P12606 | Integrin beta-1-A OS=Xenopus laevis OX=8355 GN=itgb1-a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000809 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08725 all species → | Integrin_b_cyt | Integrin beta cytoplasmic domain | Domain | Interproscan |
| PF07974 all species → | EGF_2 | EGF-like domain | Domain | Interproscan |
| PF07965 all species → | Integrin_B_tail | Integrin beta tail domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015812 all species → | Family | Integrin beta subunit | Interproscan |
| IPR014836 all species → | Domain | Integrin beta subunit, cytoplasmic domain | Interproscan |
| IPR013111 all species → | Domain | EGF-like domain, extracellular | Interproscan |
| IPR036349 all species → | Homologous_superfamily | Integrin beta tail domain superfamily | Interproscan |
| IPR012896 all species → | Domain | Integrin beta subunit, tail | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10082 all species → | INTEGRIN BETA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005178 all species → | Molecular Function | integrin binding | Interproscan |
| GO:0005925 all species → | Cellular Component | focal adhesion | Interproscan |
| GO:0007160 all species → | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0007229 all species → | Biological Process | integrin-mediated signaling pathway | Interproscan |
| GO:0008305 all species → | Cellular Component | integrin complex | Interproscan |
| GO:0009986 all species → | Cellular Component | cell surface | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0033627 all species → | Biological Process | cell adhesion mediated by integrin | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06493 | ITGB3, CD61; integrin beta 3 | - | CD molecules | ko04090 | deepkoala |
Transcript abundance of CAB4018780.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
