Gene detail

Detailed information of CAB4018956.1 in Paramuricea clavata

Genomic Location: pcla8_s010611:12061...12750
NR annotation: CAB4018956.1, peptide deformylase, mitochondrial-like [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
S4R2K0	Peptide deformylase, mitochondrial OS=Mus musculus OX=10090 GN=Pdf PE=3 SV=1
Q9HBH1	Peptide deformylase, mitochondrial OS=Homo sapiens OX=9606 GN=PDF PE=1 SV=1
Q9FV53	Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006126 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01327 all species →	Pep_deformylase	Polypeptide deformylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036821 all species →	Homologous_superfamily	Peptide deformylase superfamily	Interproscan
IPR023635 all species →	Family	Peptide deformylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10458 all species →	PEPTIDE DEFORMYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042586 all species →	Molecular Function	peptide deformylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0018206 all species →	Biological Process	peptidyl-methionine modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01462	PDF, def; peptide deformylase	EC:3.5.1.88	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.