Genomic Location: not available for this species
NR annotation: CAB4018960.1, zinc metalloprotease [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4018960.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A4RGT4 | Extracellular metalloprotease MGG_08041 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MGG_08041 PE=3 SV=1 |
| B2AC45 | Extracellular metalloprotease PODANS_2_14170 OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) OX=515849 GN=Pa_2_14170 PE=3 SV=1 |
| D1ZSU8 | Extracellular metalloprotease SMAC_06893 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) OX=771870 GN=SMAC_06893 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010105 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00045 all species → | Hemopexin | Hemopexin | Repeat | Interproscan |
| PF05572 all species → | Peptidase_M43 | Pregnancy-associated plasma protein-A | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018487 all species → | Repeat | Hemopexin-like repeats | Interproscan |
| IPR036375 all species → | Homologous_superfamily | Hemopexin-like domain superfamily | Interproscan |
| IPR000585 all species → | Domain | Hemopexin-like domain | Interproscan |
| IPR024079 all species → | Homologous_superfamily | Metallopeptidase, catalytic domain superfamily | Interproscan |
| IPR008754 all species → | Domain | Peptidase M43, pregnancy-associated plasma-A | Interproscan |
| IPR018486 all species → | Conserved_site | Hemopexin, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47466 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
CAB4018960.1.Transcript abundance of CAB4018960.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
