Genomic Location: not available for this species
NR annotation: CAB4019007.1, ubiquitin-like modifier-activating enzyme 6, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4019007.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A0AVT1 | Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens OX=9606 GN=UBA6 PE=1 SV=1 |
| Q8C7R4 | Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus OX=10090 GN=Uba6 PE=1 SV=1 |
| A3KMV5 | Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus OX=9913 GN=UBA1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001434 (this species only) |
| Ubiquitin family | E1|ThiF|ThiF · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00899 all species → | ThiF | ThiF family | Domain | Interproscan |
| PF16190 all species → | E1_FCCH | Ubiquitin-activating enzyme E1 FCCH domain | Domain | Interproscan |
| PF16191 all species → | E1_4HB | Ubiquitin-activating enzyme E1 four-helix bundle | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000594 all species → | Domain | THIF-type NAD/FAD binding fold | Interproscan |
| IPR032418 all species → | Domain | Ubiquitin-activating enzyme E1, FCCH domain | Interproscan |
| IPR042302 all species → | Homologous_superfamily | Ubiquitin-activating enzyme E1, FCCH domain superfamily | Interproscan |
| IPR032420 all species → | Domain | Ubiquitin-activating enzyme E1, four-helix bundle | Interproscan |
| IPR045886 all species → | Family | ThiF/MoeB/HesA family | Interproscan |
| IPR035985 all species → | Homologous_superfamily | Ubiquitin-activating enzyme | Interproscan |
| IPR000011 all species → | Family | Ubiquitin/SUMO-activating enzyme E1-like | Interproscan |
| IPR042449 all species → | Homologous_superfamily | Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10953 all species → | UBIQUITIN-ACTIVATING ENZYME E1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004839 all species → | Molecular Function | ubiquitin activating enzyme activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0006974 all species → | Biological Process | DNA damage response | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0019780 all species → | Molecular Function | FAT10 activating enzyme activity | Interproscan |
| GO:0032446 all species → | Biological Process | protein modification by small protein conjugation | Interproscan |
| GO:0008641 all species → | Molecular Function | ubiquitin-like modifier activating enzyme activity | Interproscan |
| GO:0036211 all species → | Biological Process | protein modification process | Interproscan |
CAB4019007.1.Transcript abundance of CAB4019007.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
