Genomic Location: not available for this species
NR annotation: CAB4019691.1, 60S ribosomal L4-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4019691.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P49691 | Large ribosomal subunit protein uL4y OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2 |
| Q9SF40 | Large ribosomal subunit protein uL4z OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1 |
| Q9XF97 | Large ribosomal subunit protein uL4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006123 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14374 all species → | Ribos_L4_asso_C | 60S ribosomal protein L4 C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045240 all species → | Family | Large ribosomal subunit protein uL4, eukaryotic and archaeal type | Interproscan |
| IPR025755 all species → | Domain | Large ribosomal subunit protein uL4, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19431 all species → | 60S RIBOSOMAL PROTEIN L4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
CAB4019691.1.Transcript abundance of CAB4019691.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
