Genomic Location: not available for this species
NR annotation: CAB4019848.1, CXXC-type zinc finger 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4019848.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5EA28 | CXXC-type zinc finger protein 1 OS=Bos taurus OX=9913 GN=CXXC1 PE=2 SV=1 |
| Q9P0U4 | CXXC-type zinc finger protein 1 OS=Homo sapiens OX=9606 GN=CXXC1 PE=1 SV=2 |
| Q9CWW7 | CXXC-type zinc finger protein 1 OS=Mus musculus OX=10090 GN=Cxxc1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002227 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02008 all species → | zf-CXXC | CXXC zinc finger domain | Domain | Interproscan |
| PF00628 all species → | PHD | PHD-finger | Domain | Interproscan |
| PF12269 all species → | CpG_bind_C | CpG binding protein C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR002857 all species → | Domain | Zinc finger, CXXC-type | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR037869 all species → | Family | Spp1/CFP1 | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR022056 all species → | Domain | CpG binding protein, C-terminal | Interproscan |
| IPR019786 all species → | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46174 all species → | CXXC-TYPE ZINC FINGER PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0048188 all species → | Cellular Component | Set1C/COMPASS complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14960 | CXXC1, SPP1, CPS40; COMPASS component SPP1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4019848.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 18.90 | 52.60 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 9.30 | 26.68 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 10.61 | 25.98 | |
| apical branchlet · Control at T0 | 4 | 2 | 10.95 | 27.90 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
