Genomic Location: not available for this species
NR annotation: CAB4019917.1, peptidyl-prolyl cis-trans isomerase-like 4 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4019917.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8WUA2 | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens OX=9606 GN=PPIL4 PE=1 SV=1 |
| Q9CXG3 | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus OX=10090 GN=Ppil4 PE=1 SV=2 |
| G5EEW6 | Peptidyl-prolyl cis-trans isomerase sig-7 OS=Caenorhabditis elegans OX=6239 GN=sig-7 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004998 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00160 all species → | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR029000 all species → | Homologous_superfamily | Cyclophilin-like domain superfamily | Interproscan |
| IPR035538 all species → | Domain | PPIL4-like, cyclophilin domain | Interproscan |
| IPR002130 all species → | Domain | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain | Interproscan |
| IPR035542 all species → | Family | Cyclophilin-RNA interacting protein | Interproscan |
| IPR003954 all species → | Domain | RNA recognition motif domain, eukaryote | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45843 all species → | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0000413 all species → | Biological Process | protein peptidyl-prolyl isomerization | Interproscan |
| GO:0003755 all species → | Molecular Function | peptidyl-prolyl cis-trans isomerase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12735 | PPIL4; peptidyl-prolyl cis-trans isomerase-like 4 | EC:5.2.1.8 | Chaperones and folding catalysts | ko03110 | deepkoala |
Transcript abundance of CAB4019917.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 9.37 | 20.23 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 5.52 | 22.52 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 1.39 | 3.52 | |
| apical branchlet · Control at T0 | 4 | 2 | 2.51 | 5.54 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
