Genomic Location: not available for this species
NR annotation: CAB4020017.1, 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4020017.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0II68 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Bos taurus OX=9913 GN=ACMSD PE=2 SV=1 |
| Q8TDX5 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Homo sapiens OX=9606 GN=ACMSD PE=1 SV=1 |
| Q8R519 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Mus musculus OX=10090 GN=Acmsd PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003888 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04909 all species → | Amidohydro_2 | Amidohydrolase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006680 all species → | Domain | Amidohydrolase-related | Interproscan |
| IPR032466 all species → | Homologous_superfamily | Metal-dependent hydrolase | Interproscan |
| IPR032465 all species → | Family | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21240 all species → | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0016831 all species → | Molecular Function | carboxy-lyase activity | Interproscan |
| GO:0019748 all species → | Biological Process | secondary metabolic process | Interproscan |
CAB4020017.1.Transcript abundance of CAB4020017.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
