Detailed information of CAB4020210.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4020210.1, methylmalonyl- mutase, mitochondrial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB4020210.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9GK13Methylmalonyl-CoA mutase, mitochondrial OS=Bos taurus OX=9913 GN=MMUT PE=2 SV=1
Q8MI68Methylmalonyl-CoA mutase, mitochondrial OS=Sus scrofa OX=9823 GN=MMUT PE=2 SV=2
P16332Methylmalonyl-CoA mutase, mitochondrial OS=Mus musculus OX=10090 GN=Mmut PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006028 (this species only)

 Pfam domain
No Pfam domain signature was detected for CAB4020210.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR006159
all species →		DomainMethylmalonyl-CoA mutase, C-terminalInterproscan
IPR036724
all species →		Homologous_superfamilyCobalamin-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48101
all species →		METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016853
all species →		Molecular Functionisomerase activityInterproscan
GO:0031419
all species →		Molecular Functioncobalamin bindingInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0004494
all species →		Molecular Functionmethylmalonyl-CoA mutase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0019678
all species →		Biological Processpropionate metabolic process, methylmalonyl pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB4020210.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4020210.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
1TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 0 0.00 0.00
apical branchlet · Temperature treatment at T0 6 0 0.00 0.00
apical branchlet · Temperature treatment at T25 5 0 0.00 0.00
apical branchlet · Control at T0 4 1 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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