Genomic Location: not available for this species
NR annotation: CAB4020395.1, -glutamine gamma-glutamyltransferase 4, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4020395.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P52183 | Annulin OS=Schistocerca americana OX=7009 PE=2 SV=1 |
| Q05187 | Hemocyte protein-glutamine gamma-glutamyltransferase OS=Tachypleus tridentatus OX=6853 PE=1 SV=1 |
| Q01841 | Protein-glutamine gamma-glutamyltransferase 2 OS=Gallus gallus OX=9031 GN=TGM2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000881 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01841 all species → | Transglut_core | Transglutaminase-like superfamily | Family | Interproscan |
| PF00927 all species → | Transglut_C | Transglutaminase family, C-terminal ig like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050779 all species → | Family | Protein-glutamine gamma-glutamyltransferases | Interproscan |
| IPR036985 all species → | Homologous_superfamily | Transglutaminase-like superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR002931 all species → | Domain | Transglutaminase-like | Interproscan |
| IPR036238 all species → | Homologous_superfamily | Transglutaminase, C-terminal domain superfamily | Interproscan |
| IPR008958 all species → | Domain | Transglutaminase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11590 all species → | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003810 all species → | Molecular Function | protein-glutamine gamma-glutamyltransferase activity | Interproscan |
| GO:0018149 all species → | Biological Process | peptide cross-linking | Interproscan |
CAB4020395.1.Transcript abundance of CAB4020395.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
