Genomic Location: not available for this species
NR annotation: CAB4020608.1, mRNA export factor [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4020608.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5FVA9 | mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1 |
| Q9W2E7 | Protein Rae1 OS=Drosophila melanogaster OX=7227 GN=Rae1 PE=1 SV=1 |
| Q5E9A4 | mRNA export factor OS=Bos taurus OX=9913 GN=RAE1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002173 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10971 all species → | MRNA EXPORT FACTOR AND BUB3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000972 all species → | Biological Process | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005643 all species → | Cellular Component | nuclear pore | Interproscan |
| GO:0006405 all species → | Biological Process | RNA export from nucleus | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14298 | RAE1, GLE2; mRNA export factor | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4020608.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
