Genomic Location: not available for this species
NR annotation: CAB4020643.1, transport Sec23A-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4020643.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7SZE5 | Protein transport protein Sec23A OS=Danio rerio OX=7955 GN=sec23a PE=2 SV=1 |
| Q9D662 | Protein transport protein Sec23B OS=Mus musculus OX=10090 GN=Sec23b PE=1 SV=1 |
| A2VDL8 | Protein transport protein Sec23A OS=Bos taurus OX=9913 GN=SEC23A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005212 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04810 all species → | zf-Sec23_Sec24 | Sec23/Sec24 zinc finger | Domain | Interproscan |
| PF04811 all species → | Sec23_trunk | Sec23/Sec24 trunk domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR006895 all species → | Domain | Zinc finger, Sec23/Sec24-type | Interproscan |
| IPR006896 all species → | Domain | Sec23/Sec24, trunk domain | Interproscan |
| IPR037364 all species → | Family | Protein transport protein Sec23 | Interproscan |
| IPR036174 all species → | Homologous_superfamily | Zinc finger, Sec23/Sec24-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11141 all species → | PROTEIN TRANSPORT PROTEIN SEC23 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0030127 all species → | Cellular Component | COPII vesicle coat | Interproscan |
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0070971 all species → | Cellular Component | endoplasmic reticulum exit site | Interproscan |
| GO:0090110 all species → | Biological Process | COPII-coated vesicle cargo loading | Interproscan |
CAB4020643.1.Transcript abundance of CAB4020643.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 19.50 | 58.13 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 18.71 | 43.06 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 3.87 | 19.35 | |
| apical branchlet · Control at T0 | 4 | 3 | 33.79 | 55.06 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
