Genomic Location: not available for this species
NR annotation: CAB4020711.1, jouberin isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4020711.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8K3E5 | Jouberin OS=Mus musculus OX=10090 GN=Ahi1 PE=1 SV=2 |
| Q6DTM3 | Jouberin OS=Rattus norvegicus OX=10116 GN=Ahi1 PE=1 SV=1 |
| Q8N157 | Jouberin OS=Homo sapiens OX=9606 GN=AHI1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003417 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | UBD|Other|SH3 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00018 all species → | SH3_1 | SH3 domain | Domain | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR052803 all species → | Family | Primary Cilium-Associated Jouberin | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44499 all species → | JOUBERIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0036064 all species → | Cellular Component | ciliary basal body | Interproscan |
| GO:0044458 all species → | Biological Process | motile cilium assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16740 | AHI1; jouberin | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of CAB4020711.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 28.04 | 55.78 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 13.32 | 28.30 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 8.35 | 16.73 | |
| apical branchlet · Control at T0 | 4 | 3 | 8.47 | 23.64 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
