Genomic Location: not available for this species
NR annotation: CAB4020849.1, PHD finger 13, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4020849.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6P6X9 | Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1 |
| Q86YI8 | PHD finger protein 13 OS=Homo sapiens OX=9606 GN=PHF13 PE=1 SV=2 |
| Q8K2W6 | PHD finger protein 13 OS=Mus musculus OX=10090 GN=Phf13 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008068 (this species only) |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05172 all species → | Nup35_RRM | Nup53/35/40-type RNA recognition motif | Domain | Interproscan |
| PF20826 all species → | PHD_5 | PhD finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017389 all species → | Family | Nucleoporin, NUP53 | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR007846 all species → | Domain | RNA-recognition motif (RRM) Nup35-type domain | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21527 all species → | NUCLEOPORIN NUP35 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005543 all species → | Molecular Function | phospholipid binding | Interproscan |
| GO:0006607 all species → | Biological Process | NLS-bearing protein import into nucleus | Interproscan |
| GO:0006913 all species → | Biological Process | nucleocytoplasmic transport | Interproscan |
| GO:0006999 all species → | Biological Process | nuclear pore organization | Interproscan |
| GO:0017056 all species → | Molecular Function | structural constituent of nuclear pore | Interproscan |
| GO:0031965 all species → | Cellular Component | nuclear membrane | Interproscan |
| GO:0044613 all species → | Cellular Component | nuclear pore central transport channel | Interproscan |
| GO:0044615 all species → | Cellular Component | nuclear pore nuclear basket | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
CAB4020849.1.Transcript abundance of CAB4020849.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 33.07 | 106.46 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 34.18 | 99.67 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 9.67 | 27.91 | |
| apical branchlet · Control at T0 | 4 | 1 | 9.53 | 38.14 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
