Genomic Location: not available for this species
NR annotation: CAB4021000.1, nucleoporin seh1 isoform X2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4021000.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5U4Y8 | Nucleoporin SEH1 OS=Xenopus tropicalis OX=8364 GN=seh1l PE=2 SV=1 |
| Q4FZW5 | Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=1 SV=1 |
| Q6GNF1 | Nucleoporin SEH1-B OS=Xenopus laevis OX=8355 GN=seh1l-b PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005480 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR037363 all species → | Family | Sec13/Seh1 family | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11024 all species → | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0031080 all species → | Cellular Component | nuclear pore outer ring | Interproscan |
| GO:0034198 all species → | Biological Process | cellular response to amino acid starvation | Interproscan |
| GO:0035859 all species → | Cellular Component | Seh1-associated complex | Interproscan |
| GO:1904263 all species → | Biological Process | positive regulation of TORC1 signaling | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14299 | SEH1; nucleoporin SEH1 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB4021000.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 7.38 | 29.38 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 4.30 | 19.58 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.70 | 8.52 | |
| apical branchlet · Control at T0 | 4 | 1 | 3.10 | 12.40 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
