Genomic Location: not available for this species
NR annotation: CAB4021052.1, mRNA turnover 4 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4021052.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A4FV84 | mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1 |
| Q9UKD2 | mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2 |
| Q9D0I8 | mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007552 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00466 all species → | Ribosomal_L10 | Ribosomal protein L10 | Family | Interproscan |
| PF17777 all species → | RL10P_insert | Insertion domain in 60S ribosomal protein L10P | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001790 all species → | Family | Large ribosomal subunit protein uL10 | Interproscan |
| IPR051742 all species → | Family | Ribosomal Assembly Factor uL10 | Interproscan |
| IPR043164 all species → | Homologous_superfamily | Large ribosomal subunit protein uL10-like, insertion domain superfamily | Interproscan |
| IPR043141 all species → | Homologous_superfamily | Large ribosomal subunit protein uL10-like domain superfamily | Interproscan |
| IPR033867 all species → | Family | Ribosome assembly factor Mrt4 | Interproscan |
| IPR040637 all species → | Domain | Large ribosomal subunit protein uL10-like, insertion domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45841 all species → | MRNA TURNOVER PROTEIN 4 MRTO4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000956 all species → | Biological Process | nuclear-transcribed mRNA catabolic process | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0030687 all species → | Cellular Component | preribosome, large subunit precursor | Interproscan |
| GO:0042273 all species → | Biological Process | ribosomal large subunit biogenesis | Interproscan |
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14815 | MRT4; mRNA turnover protein 4 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB4021052.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
