Gene detail

Detailed information of CAB4021841.1 in Paramuricea clavata

Genomic Location: pcla8_s012155:6905...12162
NR annotation: CAB4021841.1, double-stranded RNA-specific adenosine deaminase-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PACLA_8A076643

ATGTCAGAGTTGAACATTCAACAATGTGATAATTTAACCAATATTGTCAATGTGAGCCAAGAACCCGACGCTCAGCTTGATCCTCGGGTGAAAATCTACTTGAGCTTGGAAGCGATCTATGACAGTGATTCGAGTGAGGAATACTCAGACGAAGATAGTTTGAGTGAGTACTCCATGGACTATGAATATTCTGCTGACGCCAATAACTATAATATGAATGTATCAATGAATAACAACACTTCACCAAACAACTGTAGAGGGGACATTGGTTCTTCCCATCAAATTCAGATTCCGTCCACTGGTCGAACTTGTACATCTGCCAAACCTAGCAACCGGCCACCCCCGCCTTCCCGAGATCTTTACAAGTCCCTTATCAACCAATCAGAGCATCCAATGAAACCTGTCCAGCATTCCACAGGGGCTTATAGTTATTCGAACATACAGGGTTCATCAAGCGGGCAAAAAACAATGTTGCAACGCTCTTTAGATGCCATGAGACAAGTTGGTAATCTAAGAGGTCACCATGACTCGGCTGCTGAGGTGATGCATGTAGCAGGCAATGGTGGAAATGCCCGTGGTACTATGGCACATCCAGCTAACCAACCTCAAACAACTTTAGGAGAGCCCCGATCACCTACCTTTTCTTCATCCCCAAGGAAACAAGAGTCTTCAAAATCACTTGCACCTTCTTGGACACACTCATCAACGAGGCAAGACAATTCTCTACACATGCTACACTCTGCAGCATCTCAAAAACCTACATCACCCACCAATGTCCCTAACCAAGTTGCATTATCTACCAGTAGCCCTGGCCATCATGCGTTACCCACAACTATCCACAAGAGGCCACCACCACCGTCGGCAGTATTCATGCAGCAAGGACCTTTGCCAACCAAGTCCCAAAAACATGTACAGCATTCAAATATACCATTGTCTCATCAGAAAGAACATACCTCACAGTATCCTAGCAACCAGAACACAGCAATTTCACAGTATCCTGGCAACCAGACCAAACCAACACCACAGTATCCAAACAGAATGCCACCACCAACACAATTTCCTACCAACTTAACCACCACCCCTTCCAGACCAGCAACTCAAACACCAGAACAATCAGTTGAATCAAAAATCATTGCCTTCCTCCAAAGTCAGGGACGTCCTTGCAACACAAAAAGTATCAGGTTGTCACTTGGTGCTGGTTCGAAAAAAGAAATAAACCCCATTCTGTATTTGATGCAACGGAAAGGAAACATTGCAAAAGTTCAGGACTCACCCCCAACATGGAAACTTTGCCAGGGAAAAGGAGTTACTACTCCACCTTCCAGCATCCAAAACCCACCAGCACGAAGCCTTGGGCGTGGTTATCCAGGCTCAAATGCATCGTACATGCAAACACCATCTCAAGTCCAATCACAAGGACAAATCGTTGGGCGTGGCACTCAAGGTCCGAGCGCATCTTACATGCCAAGCCCAGCTCAAAACCAATCTCTGACAACTCAACCTAAACCCCCCAAACCAGCTGGTGGTTCATCCACTACCGGCAAAGATTTCTTTGAAGCATGTTTTACGTCCATCAATAAAAATCCCGTCAGCGCATTCAACAATTATGCCCAGAAGAATAAAAGCGAAGCAACTTTTGAAATCATTTCCCAAAAGACTACTGGCAAACCTTCGTTTACCGTTGCCGCCAAACTTGGCAAGCACATGTTTACCGCTGTTACCGCCGGCAACATGAAGGAAGCAAAACGACAAGCTGCTGATGTTGCACTTCGAGAAATTGGACAAGCTTCGGGATCCGGTCGTCCCGATTCCACAGATGGAAAACTCGATCTTAGCAATCTACCGTCCATTCCACGTAACAACACTTGGACACATTTTGACTGCATGGCTGCATTAAGCCATCAGCTGTTTGCTCGAATCGCCCCGACCGTTTCGGCTTCGTTTGCCGGAAGAAAAGTAATTGCTTGTATGCTAATGAAACTGAGTAGCCAAGATCCTGGACGGGTTATGAGTTTGGGTGCGGGTAACCGATGTATAACTGGGGAACGAATTAGTTTGGAGGGTAGAAAGGTTAATGATTCACATGCTGAAATAGTTGCAAGGCGAGGACTGATCCGCGTGTTTTATAAAGAACTCAGCAACTGCTTTGCTGGAAAAGAATCGATATTCGTGAGGAAGGGAAGCGCGGCCAAACTTTGTCTTCGAGACGGGGTGACCTTTCATTTATATATCAGCACAGCCCCATGTGGAGATGGAGCGCTATTCTCTCCTAGGGAGGCGGGGGGTGTGGTAGCTGGGGGCGAAAACCTGACCCGAGATCACACCCCAACCTTCACCTCGAAGCAGCAAGGAATCCTTCGCACAAAGATTGAAGACGGCGAAGGGACACTGCCCATCGATTTTGACGCACCACCGCAAACCTGGGATGGCTTGCTACAAGGGGATCGGCTCCGGACCATGTCATGCAGTGATAAGATATGTCGATGGAATGTGCTGGGACTCCAAGGAGCCTTGTTAAGCCATTTCATTCAACCTATCTACCTGGATAGCCTAACTTTGGGCTATTTATACGACCACGGTCACTTATCACGTGCTGTGTGCTGTCGACTCCAACACAAGAATGACCTGAATGACCGGCTCGCACGAGGATACCATGTGAACCACCCGTGCCTCGGACGTGTTACTGCTTACGATCCCCCACGTGAAACAGAGAAAACCAACAACATCAGCATCAACTGGGCATTGGGGGACAGCAATGCCGAAGTAACAGATGGAAGGGACGGGGCTTGCCTAACCCGAACCGGCAACGCACCGACCCCGTCACGCCTCTGCAAGGCGGCGTTATACGGGAACTTCCGAGAGCTATGTCGGAGAGTACCGGAATTGCAACATCTCCTCAAGACGGACTCGTACAAGGAGGCGAAAACTTTGGCAGAAGATTTTTGCCGTTGCAAGAAAGAAATGAAAGCTCAGTTTAAGGCATCGAAGTATAGTCAGTGGGTTTCAAAACCGATGGAGCAGGATTTGTTTAGTGATTCTTTGCCCGCCTTGGATGTATAG

Transcript

rna-PACLA_8A076643

CACATTTTTACTCACAAgactatttttataattttgagAATTTCAAGCAAAAATTACTCGTTTTTTCCCTGTGGtaacaagctgaaaaatacTTACAACATTAAAGGACACTTTGGTGTGTAAAAGGTTggtttttactgtttttaaaCCTGCTGTTATGTACAAGGAATTACGTGCATGGGAGCCATATAACTCAGTCCAATATTGTGCTAGCCGCTAGGGCCTAGGCATAGAATAGATATCTGGGCCTAGGTCTCTTCTTAACAATCTGCTTGCGTTTTTCCATTGCGCATTTGTACCTTGTCTTTTGCGTGATCTACACTCTATGTATTCTTAATTccttttttcaggtagttgcatcctaGTATATTCCCTACCAACCAAAGTATtgtttaaaaagtttaatagtaaatgtatagaaagcatcaaaattgcacgcCCCATATCTCTCAGTtgcgcgatacaaactttccacactgggcATCACTCAGTTATCAAGTATGTCTGGGTTTGGGctgtgtggaaagtttgtatcgtgCAACCGAGATATCAGATGCACAaatttgatgctttctatatatttattattaagtTTTTTAAGTCTCGGGTGCAtgatttccaaactttccagtcagggaTTTGGGCTAATACAGTCGGTTTAACTAATGGTTTGACCAACTCTGCAATCTGACCCATAATTTTtgcagtcaaaccggatgttctcttgcgagcaacaatgcaaaatataatatgtcccacaatattgtaattttgataggcagattgctctgagcaatttgcaactgACGCgagcaaattgcaagttgaaattcaatTCTCTGATTGGACTATTAGCAAAAAGGAAGCCAACCAAATagtctgagcaactggattggtgcttccctctttcttgtagtccaatcagaggctttgtttacaaatctttgtgaatttcaacttgcagtTTGTTCGCGTCGGtcgcaaattgctcagagccacctgcctatcaaaattgcgatattgtgggacaatactGCAATGTTGCTCACAAGAGAACATTCGGTAACATACCTTACCATCAATACTTGAACTTCTAATATTTTAGGAAAGTTTTGAACTAACTCAGTGGAATGTCAGAGTTGAACATTCAACAATGTGATAATTTAACCAATATTGTCAATGTGAGCCAAGAACCCGACGCTCAGCTTGATCCTCGGGTGAAAATCTACTTGAGCTTGGAAGCGATCTATGACAGTGATTCGAGTGAGGAATACTCAGACGAAGATAGTTTGAGTGAGTACTCCATGGACTATGAATATTCTGCTGACGCCAATAACTATAATATGAATGTATCAATGAATAACAACACTTCACCAAACAACTGTAGAGGGGACATTGGTTCTTCCCATCAAATTCAGATTCCGTCCACTGGTCGAACTTGTACATCTGCCAAACCTAGCAACCGGCCACCCCCGCCTTCCCGAGATCTTTACAAGTCccttatcaaccaatcagagcatcCAATGAAACCTGTCCAGCATTCCACAGGGGCTTATAGTTATTCGAACATACAGGGTTCATCAAGCGGGCAAAAAACAATGTTGCAACGCTCTTTAGATGCCATGAGACAAGTTGGTAATCTAAGAGGTCACCATGACTCGGCTGCTGAGGTGATGCATGTAGCAGGCAATGGTGGAAATGCCCGTGGTACTATGGCACATCCAGCTAACCAACCTCAAACAACTTTAGGAGAGCCCCGATCACCTACCTTTTCTTCATCCCCAAGGAAACAAGAGTCTTCAAAATCACTTGCACCTTCTTGGACACACTCATCAACGAGGCAAGACAATTCTCTACACATGCTACACTCTGCAGCATCTCAAAAACCTACATCACCCACCAATGTCCCTAACCAAGTTGCATTATCTACCAGTAGCCCTGGCCATCATGCGTTACCCACAACTATCCACAAGAGGCCACCACCACCGTCGGCAGTATTCATGCAGCAAGGACCTTTGCCAACCAAGTCCCAAAAACATGTACAGCATTCAAATATACCATTGTCTCATCAGAAAGAACATACCTCACAGTATCCTAGCAACCAGAACACAGCAATTTCACAGTATCCTGGCAACCAGACCAAACCAACACCACAGTATCCAAACAGAATGCCACCACCAACACAATTTCCTACCAACTTAACCACCACCCCTTCCAGACCAGCAACTCAAACACCAGAACAATCAGTTGAATCAAAAATCATTGCCTTCCTCCAAAGTCAGGGACGTCCTTGCAACACAAAAAGTATCAGGTTGTCACTTGGTGCTGGTTCGAAAAAAGAAATAAACCCCATTCTGTATTTGATGCAACGGAAAGGAAACATTGCAAAAGTTCAGGACTCACCCCCAACATGGAAACTTTGCCAGGGAAAAGGAGTTACTACTCCACCTTCCAGCATCCAAAACCCACCAGCACGAAGCCTTGGGCGTGGTTATCCAGGCTCAAATGCATCGTACATGCAAACACCATCTCAAGTCCAATCACAAGGACAAATCGTTGGGCGTGGCACTCAAGGTCCGAGCGCATCTTACATGCCAAGCCCAGCTCAAAACCAATCTCTGACAACTCAACCTAAACCCCCCAAACCAGCTGGTGGTTCATCCACTACCGGCAAAGATTTCTTTGAAGCATGTTTTACGTCCATCAATAAAAATCCCGTCAGCGCATTCAACAATTATGCCCAGAAGAATAAAAGCGAAGCAACTTTTGAAATCATTTCCCAAAAGACTACTGGCAAACCTTCGTTTACCGTTGCCGCCAAACTTGGCAAGCACATGTTTACCGCTGTTACCGCCGGCAACATGAAGGAAGCAAAACGACAAGCTGCTGATGTTGCACTTCGAGAAATTGGACAAGCTTCGGGATCCGGTCGTCCCGATTCCACAGATGGAAAACTCGATCTTAGCAATCTACCGTCCATTCCACGTAACAACACTTGGACACATTTTGACTGCATGGCTGCATTAAGCCATCAGCTGTTTGCTCGAATCGCCCCGACCGTTTCGGCTTCGTTTGCCGGAAGAAAAGTAATTGCTTGTATGCTAATGAAACTGAGTAGCCAAGATCCTGGACGGGTTATGAGTTTGGGTGCGGGTAACCGATGTATAACTGGGGAACGAATTAGTTTGGAGGGTAGAAAGGTTAATGATTCACATGCTGAAATAGTTGCAAGGCGAGGACTGATCCGCGTGTTTTATAAAGAACTCAGCAACTGCTTTGCTGGAAAAGAATCGATATTCGTGAGGAAGGGAAGCGCGGCCAAACTTTGTCTTCGAGACGGGGTGACCTTTCATTTATATATCAGCACAGCCCCATGTGGAGATGGAGCGCTATTCTCTCCTAGGGAGGCGGGGGGTGTGGTAGCTGGGGGCGAAAACCTGACCCGAGATCACACCCCAACCTTCACCTCGAAGCAGCAAGGAATCCTTCGCACAAAGATTGAAGACGGCGAAGGGACACTGCCCATCGATTTTGACGCACCACCGCAAACCTGGGATGGCTTGCTACAAGGGGATCGGCTCCGGACCATGTCATGCAGTGATAAGATATGTCGATGGAATGTGCTGGGACTCCAAGGAGCCTTGTTAAGCCATTTCATTCAACCTATCTACCTGGATAGCCTAACTTTGGGCTATTTATACGACCACGGTCACTTATCACGTGCTGTGTGCTGTCGACTCCAACACAAGAATGACCTGAATGACCGGCTCGCACGAGGATACCATGTGAACCACCCGTGCCTCGGACGTGTTACTGCTTACGATCCCCCACGTGAAACAGAGAAAACCAACAACATCAGCATCAACTGGGCATTGGGGGACAGCAATGCCGAAGTAACAGATGGAAGGGACGGGGCTTGCCTAACCCGAACCGGCAACGCACCGACCCCGTCACGCCTCTGCAAGGCGGCGTTATACGGGAACTTCCGAGAGCTATGTCGGAGAGTACCGGAATTGCAACATCTCCTCAAGACGGACTCGTACAAGGAGGCGAAAACTTTGGCAGAAGATTTTTGCCGTTGCAAGAAAGAAATGAAAGCTCAGTTTAAGGCATCGAAGTATAGTCAGTGGGTTTCAAAACCGATGGAGCAGGATTTGTTTAGTGATTCTTTGCCCGCCTTGGATGTATAGAATTTGTCATGTTAAAGTTCACCATCGTtctatcaccaccatcattatgcTGCCTCGTAACGGCGTTAGGATAGGAGATCGATCGCATGGGCCGTTAATCTGACGAACGAAAATATATAGAAACATATacccaatagaccttatgcataatgacgtcacaaggcttgatgcccacgaggaatgctggtcttagtagtcatcgccacgtaaatttcgatagtggccattttgaattgttcaattttcccgggcgatgactactaagaccagcattcttCGCGGGCATCaggccttgtgacgtcattatgcataaggtctattagcCTGacgacgaatatccgccatttttgggtggcatttaattcttgttaaccaatgcagactagacaattaaaacaatgtgaaaagcaatttttcaaaataaactaaccatttacaaagcaaatttaccatcattcgttcaaaaaattataaaaagtcactGTTGCGTGGACTTATCTCGTAGAcgtcggctgaaaagccacccaaaaatggcggcgtgagaaaagCTATTGCACAACGTTAACGTTGGATAAGTCATATGCCTATAGTTACTATTGTAGAaaagaacaaaggtaactaaaaccctgggcaaactaggaaatattgttgtggaaacatttgtgattctcgatgtttcctcaaatgtttccctgtttgcccacccgtagaaacattgttgcggaatcaatatttccgcaacaatgtttcctagtttgctcAGGGCCTAAGCTTGGGAATTATCTACATGAGTGAACGATTCTAATGCCAGTTACATTGTTCTATTTTCTGCCCATGTAAACTGGAACAATTGTAACTAGGCGTGTGAGTTATCCAACTTTGTGAATTGGGTGGTAACAATGTAAACAACGTTAGCTGAATTTTTTATTGAACTTTAGTTGTAGtctttttaaaatcgttattttAAGAAAAGAAATTTTACAGTAAATACATTACATATCAAGTGATTTAGAAATGTGGATATAGTATCGCTATGAATCCctatgataataataatgagtAGTTTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55265	Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens OX=9606 GN=ADAR PE=1 SV=4
Q99MU3	Double-stranded RNA-specific adenosine deaminase OS=Mus musculus OX=10090 GN=Adar PE=1 SV=2
P55266	Double-stranded RNA-specific adenosine deaminase OS=Rattus norvegicus OX=10116 GN=Adar PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001415 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF02295 all species →	z-alpha	Adenosine deaminase z-alpha domain	Domain	Interproscan
PF02137 all species →	A_deamin	Adenosine-deaminase (editase) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR042371 all species →	Domain	Z-binding domain	Interproscan
IPR002466 all species →	Domain	Adenosine deaminase/editase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10910 all species →	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003726 all species →	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006382 all species →	Biological Process	adenosine to inosine editing	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008251 all species →	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004000 all species →	Molecular Function	adenosine deaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4021841.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4021841.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

2TPM > 0

4Conditions

17.4Max TPM

0.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	2	2.94	17.39
apical branchlet · Temperature treatment at T0	6	0	0.00	0.00
apical branchlet · Temperature treatment at T25	5	0	0.00	0.00
apical branchlet · Control at T0	4	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	17.39
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.23
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.