Genomic Location: not available for this species
NR annotation: CAB4022016.1, Eukaryotic translation initiation factor 3 subunit J [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4022016.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5R8D1 | Eukaryotic translation initiation factor 3 subunit J OS=Pongo abelii OX=9601 GN=EIF3J PE=2 SV=1 |
| O75822 | Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens OX=9606 GN=EIF3J PE=1 SV=2 |
| Q6INR1 | Eukaryotic translation initiation factor 3 subunit J OS=Xenopus laevis OX=8355 GN=eif3j PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006678 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08597 all species → | eIF3_subunit | Translation initiation factor eIF3 subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013906 all species → | Family | Eukaryotic translation initiation factor 3 subunit J | Interproscan |
| IPR023194 all species → | Homologous_superfamily | Eukaryotic translation initiation factor 3-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21681 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005852 all species → | Cellular Component | eukaryotic translation initiation factor 3 complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03245 | EIF3J; translation initiation factor 3 subunit J | - | Translation factors | ko03012 | deepkoala |
Transcript abundance of CAB4022016.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
