Gene detail

Detailed information of CAB4022207.1 in Paramuricea clavata

Genomic Location: :...
NR annotation: CAB4022207.1, tRNA-splicing ligase homolog, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q99LF4	RNA-splicing ligase RtcB homolog OS=Mus musculus OX=10090 GN=Rtcb PE=1 SV=1
Q6AYT3	RNA-splicing ligase RtcB homolog OS=Rattus norvegicus OX=10116 GN=Rtcb PE=2 SV=1
Q5E9T9	RNA-splicing ligase RtcB homolog OS=Bos taurus OX=9913 GN=RTCB PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan
PF13419	HAD_2	Haloacid dehalogenase-like hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036025	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR006439	Family	HAD hydrolase, subfamily IA	Interproscan
IPR001233	Family	RNA-splicing ligase, RtcB	Interproscan
IPR011945	Domain	Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal	Interproscan
IPR041492	Family	Haloacid dehalogenase-like hydrolase	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023198	Homologous_superfamily	Phosphoglycolate phosphatase-like, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008452	Molecular Function	RNA ligase activity	Interproscan
GO:0000971	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972	Molecular Function	RNA ligase (ATP) activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0072669	Cellular Component	tRNA-splicing ligase complex	Interproscan