Genomic Location: not available for this species
NR annotation: CAB4023609.1, Secretory carrier-associated membrane 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4023609.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O77735 | Secretory carrier-associated membrane protein 1 OS=Sus scrofa OX=9823 GN=SCAMP1 PE=2 SV=1 |
| O15126 | Secretory carrier-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=SCAMP1 PE=1 SV=2 |
| Q8K021 | Secretory carrier-associated membrane protein 1 OS=Mus musculus OX=10090 GN=Scamp1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002763 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04144 all species → | SCAMP | SCAMP family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007273 all species → | Family | SCAMP | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10687 all species → | SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015031 all species → | Biological Process | protein transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0032588 all species → | Cellular Component | trans-Golgi network membrane | Interproscan |
| GO:0055038 all species → | Cellular Component | recycling endosome membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19995 | SCAMP; secretory carrier-associated membrane protein | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB4023609.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
