Genomic Location: not available for this species
NR annotation: CAB4023927.1, phenylalanine ammonia-lyase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4023927.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P52777 | Phenylalanine ammonia-lyase OS=Pinus taeda OX=3352 GN=PAL PE=3 SV=1 |
| P0DO55 | Phenylalanine/tyrosine ammonia-lyase 1 OS=Fritillaria unibracteata OX=152095 GN=PAL1 PE=1 SV=1 |
| P0DUM0 | Phenylalanine ammonia-lyase hkm12 OS=Aspergillus hancockii OX=1873369 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002235 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00221 all species → | Lyase_aromatic | Aromatic amino acid lyase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001106 all species → | Family | Aromatic amino acid lyase | Interproscan |
| IPR024083 all species → | Homologous_superfamily | Fumarase/histidase, N-terminal | Interproscan |
| IPR008948 all species → | Homologous_superfamily | L-Aspartase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10362 all species → | HISTIDINE AMMONIA-LYASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016841 all species → | Molecular Function | ammonia-lyase activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10775 | PAL; phenylalanine ammonia-lyase | EC:4.3.1.24 | Phenylpropanoid biosynthesis | ko00940 | deepkoala |
Transcript abundance of CAB4023927.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
