Genomic Location: not available for this species
NR annotation: CAB4024025.1, Prefoldin subunit 3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4024025.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P61759 | Prefoldin subunit 3 OS=Mus musculus OX=10090 GN=Vbp1 PE=1 SV=2 |
| P61758 | Prefoldin subunit 3 OS=Homo sapiens OX=9606 GN=VBP1 PE=1 SV=4 |
| Q5RCG9 | Prefoldin subunit 3 OS=Pongo abelii OX=9601 GN=VBP1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007097 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02996 all species → | Prefoldin | Prefoldin subunit | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016655 all species → | Family | Prefoldin subunit 3 | Interproscan |
| IPR004127 all species → | Family | Prefoldin alpha-like | Interproscan |
| IPR009053 all species → | Homologous_superfamily | Prefoldin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12409 all species → | PREFOLDIN SUBUNIT 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005844 all species → | Cellular Component | obsolete polysome | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0007017 all species → | Biological Process | microtubule-based process | Interproscan |
| GO:0007021 all species → | Biological Process | tubulin complex assembly | Interproscan |
| GO:0015631 all species → | Molecular Function | tubulin binding | Interproscan |
| GO:0016272 all species → | Cellular Component | prefoldin complex | Interproscan |
CAB4024025.1.Transcript abundance of CAB4024025.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
