Gene detail

Detailed information of CAB4024159.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4024159.1, autophagy 5-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4024159.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MQ24	Autophagy protein 5 OS=Bos taurus OX=9913 GN=ATG5 PE=2 SV=2
Q9H1Y0	Autophagy protein 5 OS=Homo sapiens OX=9606 GN=ATG5 PE=1 SV=2
Q99J83	Autophagy protein 5 OS=Mus musculus OX=10090 GN=Atg5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007617 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20637 all species →	ATG5_HBR	Autophagy protein ATG5, alpha-helical bundle region	Domain	Interproscan
PF04106 all species →	ATG5_UblB	Autophagy protein ATG5, UblB domain	Domain	Interproscan
PF20638 all species →	ATG5_UblA	Autophagy protein ATG5, UblA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042526 all species →	Homologous_superfamily	Autophagy protein Atg5, helix rich domain	Interproscan
IPR042527 all species →	Homologous_superfamily	Autophagy protein Atg5, UblA domain superfamily	Interproscan
IPR048940 all species →	Domain	Autophagy protein ATG5, alpha-helical bundle region	Interproscan
IPR048318 all species →	Domain	Autophagy protein ATG5, UblB domain	Interproscan
IPR007239 all species →	Family	Autophagy-related protein 5	Interproscan
IPR048939 all species →	Domain	Autophagy protein ATG5, UblA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13040 all species →	AUTOPHAGY PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006501 all species →	Biological Process	C-terminal protein lipidation	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0006995 all species →	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0019776 all species →	Molecular Function	Atg8-family ligase activity	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034274 all species →	Cellular Component	Atg12-Atg5-Atg16 complex	Interproscan
GO:0044804 all species →	Biological Process	nucleophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08339	ATG5; autophagy-related protein 5	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4024159.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

10TPM > 0

4Conditions

17.3Max TPM

5.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	9.27	17.31
apical branchlet · Temperature treatment at T0	6	3	4.13	14.51
apical branchlet · Temperature treatment at T25	5	1	0.96	4.82
apical branchlet · Control at T0	4	2	5.60	15.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	17.31
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	13.79
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	12.99
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	11.53
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	14.51
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	7.31
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.97
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	4.82
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	15.32
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	7.09
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.