Gene detail

Detailed information of CAB4024266.1 in Paramuricea clavata

Genomic Location: pcla8_s013565:1176...7426
NR annotation: CAB4024266.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A073300

tacaaaataaacgtgatgtttccacaaataccaaacaaatatattttcggCATGCAATCATACAAGCCTTTCGCGGCGAAATTGAAACTTATACACTCACTATATATTAAATGAAGTAATCTAGTTTAGTGTCTTCTTACACTGGATCTCGACAAAAAACAGGTTGATCACTGGCTAATTGTGCAGACGGAATTCCAAAACAAAATGATATGGCGAATGTTGACAACGAAGAACTAAGTATATTTTGCAAGAATAACAATGTTAAGGAGTAAGGAAAAATACAAGatctaaactaaacaaactatAGTATcctctagtataaataaattgaatCCAGTTTAAGTTTCGTCCGGTATATACTTTagttacaatgtcaatgaaccACTGTATACAGGGCAGCAGCGAAGAGTTtgaaaggggggaggggggtagtATCAGATTTGCCGACAACATTTCCGttgctaattaatatttttccgccaaattgttggcgagcggggagatcgcaaaatttttttccggacataaaaatgttttttatagCCTCTCCGTGAGAACATGCAGTCTACATTAAATAAAGCTATAAAGCTAAACTTAATTCAATTTGGTTGAATTTAGTAGTTGCAGTGTGCTTTCCGTATtcataaaaatgtttaataagACCAAGCATTGTCGATTTTGATACTGCATTATGTGAAGATATGGCTATCTTCAGCATTTATTCCGTACCATATAAATTAAACAACTGAAAAACATTGTTTTGAGCATATaagctttaaaattatatatatacaatataacatactggtatacaaatatatttcaattaatAGAAAGGGTTCTGCGAAATATGCATGGCTCGCTGCTGTATTGATGTGTGATTCGTAAGTTTGTGTGCCTCGCATGGCTTGCACTTTATGCAGACCCAagattattgaaaatttgaaataataacGATAATAAATTGACATTTTCAACACTGCATCCATAGTaagtcattttgtattttgcGTAAGAACTGATCTGTAATTTACGAACTCCAGTTCCGCGTACTTCCCAAGTTTGGCCATGGACCATTTTTTTATAGCCTCACTCAATGTCAATGACCAAATTTACTATGCTTtattagattttatttttgtgaactGACAGTCAATCTTCGAAAGGAGCTTATGAGTTATCTAATGTGGTCATTGCTCAACGATTTTCCATTACCTAGTGATTATTTTTTCACCGCGTAAATCGCCACGAAAATTGAGTAGGATATATCCGAAAACCGCCGTCTCAAAATCGCCAAAACCGCCTAACCGCTGTTGCACGTTGATCTCCTACCACGAGACCTCCTTACGCGGGAGATGGAAATTAGGAAGAACGTTGTTGCTTACGTGCGATGGGACACGaacatatagatatatagatatacacAGAGAAATGGATTAATATAACATAAATAAGAACTTTACAACCGCCAAACTATAATGGACCCCCTTATAACTTCGCCAACTTTATAAACCATACAAGAGCGCATGCTTGCTGGATAATTTTCTGTACGCAAGTTGGTCAAACCTGGTTCTCGTCTTTTACGACAATGTTTCTCTTAAAGCGCCTCTATCGCGCTCTCTTAGTTGGTAATGGCATTGCGTTTGACAATTGTCCGTAGCAAATGTCTAAAGAGACAATGTGTATAGAGAATTATtaagtattaatatttgtacAGGTTGTCCCAAAAAATGTCACTCTTACAAAACTAACAATATTACCGTTGTTGACAAGACAAAGccaaaaaatatatttgacaCAAATAACGTACCTATAGGTTATTATCTATCATTGGTTACAGCTGTCGGTTACACACAACGGAATCATTTACATTTGGAGTAAGCATGTGAGAATAGCAAAATCCCAACTAGCGTATTTTAATGGCAAACATTTTGTGTCGAATACTCGATATTTCGGGGTTCACTGCAGCTCAGCAACGCATTTTTTTGGTTTTGAAGTACCGGCAGACAAAAAGTCCAAGGTAGCCAAGTTGAGCGTTTGAGTGGCCATTTTGATCAAACTTGGGAAATTGAGCAAAATGGATGTGGAAATCAAAATGCAATATTTCGGAATTGCGTGGCAGACTATACGGTTTGAAGCTACACGACAGCTTAGTCATAAACACGAAATGTGTCATGTTTTTACAATTTTGCATTAActtaaataattacaatacaagATGATTCTTCTCAGAGTGCCATTTTTTtggatatactgtatattaattatcaatatttgtatatttttgtgtattTTGGTTGTAGATTGGCGATGGACACTAAGCGAGCAATATCCATCATAGGGACTGGAGATTTTGGATGCGCACTCGCCAAACGACTCATCCAGAATGGTTACAAGGTTACTATTGGAAGCCGCAGTCCACTCAACCGAAACCTCCAGAAGCGTGACGAAATACTTAAAGATGCACATCTCGTATCTGTACGAGACTGTATCATCGCTTCAAACATGGTAATTGTCGCTATTCCTTATAAGTACGCAGACTCCCTCAAAATCCATGAAGATTTTTTACAAGGCAAATTCCTGGTCGATGTCAGCAATCCATCCAAGAGATCCAAAGAAAAGTCCAATGCAGAAAAACTTGCTGACTTGCTTCCCAAATCAATTGTCATCAAATGCTTCAACACCGTATCTGCATACTCAATGGGAGATGACACTTCCAACGAACATCGCCAGGTTTACGTAGCAAGCGATGACTTGTCTGCCTTGGAAGCTGTTGCTCAAATGTCCAGAGATATTGGATTCGCTGTGCACAATGCGGGCAGGCTTCATATGGCTAGAGATCTGGAGTCTGAACCTCTGTATCTGTTTCGAGGTTGGGGCTGGCCTACTTCATTCACGATTGGCTTGTTTCTGATGGAGCTCCTCTATCTGTTTGTTGTCATGTACATCGCGGTAGATAGGTACGATATCAGTCAGATACCAACCTACGTGCTGTACAAGGCAACTGGGGCGGTGAGTGTCAACCTCCTGGCATTCTGTTACCTACCAGGAGTGCTGGCAGCCTTTGCTCAAATCTACTATGGCTCCAAACACACACGTTTCCAGCCATGGTTAGATAGCTGGCTACAAGGTCGCAAACAACTGGGAATATACTCTTTGTTGTTTGGCTTCATGCACATGATTACGGTAATGAGCTGCATGAATGGATCTTACTTCGATTATCTCTTCAAACAACAATACGTCATTGTTGAAGTCAACGGCACAGAAGACACCAAGATTCCAGTCGATACCAAGATGAACCTGCACGGTGAAGGGTGTATTGCCACTGGGCTGATTGCTCTCTGTTCAATGGGGATCATTGGTCTCACCTCCGTCCCTGCTATTGGGGCCCTAATGAACTGGCGGGAATGGCGCTTCATCCAATCTCAGTTTGGCTTTGTCTGCTTCTTGCTGACAGTGGGGCATTGCATGGTCCACGGAGTAGCTCGATGGATGATCCAGCGTGACCTTCTCCTCAGGAATAGCTTTATGAGCCTGATCTTGCCTTGGTTGACTCTGTTTCTAAAAATCATCTACTTCGTTCCTTGTGTACACATGTACGTATGGAAGATCAGAGGAGGGTATGAAAGAGGGGTCAAATACGACTTAGAGAAAGGCGATGCTGAATCCTACACTAACAAAGCCTTGGACGAACACGAAACATCATTTGGTGGTAATGATGCAAAACTGTAATGTAACACTTTTTAACTCTTCATAATTACATAACCTATATCCACCTTTGTGTTTATCGTATATAATTGACTTTACCTAAAAGCTATGGATGTCAAATTGGCTTCATATATACTTTTTGTTGGGTACAATgaaattttgacaatttttattCTGTTCTCTTTTTAAACTAAATTTTCCGATATTTTGCAACAAATTTACTTGGCACATACCATAGTTTAGGGAAATAAGCTTTTTGTAGCCTCTGTGTTCACCTAAATGTTCATTGTTTTCACCGTTAATTCTcgttatataatataaatcaaTTGAGCCAATATTAGTAAACGTAATGTGTTTTGTTGAGCCCCTGGGAGCATTATGCTAGCCCAGTTTTTCGTTGTAGGCTCAAACGACGTGATAGCTATAATAATGCTGTGTTGTGTAAAATTAAACGTCTATTATATAATTCTGAGTCTGTTTTCGTTGATATACCGCGGGATATAACTAGGTTATTTACATTGAATAAATAATTTGATGAAACTTGTGGAGAAATCTCGACTGAAAGCCTTCAAAGTCGATAAAACCTTGTTGGAAAACCGCCTCAAAAATTATATACGTAGGTTATATACCTCGAACTTGGAATATAAGTCAGTTATTCGCCCTCGGAGTCTACGGCACCTCAGCTCAATAACTGACATATATCCCGCATTCTCGGTATTtaacctatacttatatatCCACATGTGTCTAGTATGTACACGCTCTTTATTCTTTCTGTCATCTCTTTTTCAGCCAAGGACGGTTGAATCGGAGAAAGGTGGGAATGTTATGCCATATGAACTATATTTCAACATTAAATGTTGATCGTGGTTAAGGTGAACGAAGGCCGAAGCATACGATCCATTAGTGATACCCCCCAAAAACGCGCAATACCCGAACATTACAGCATACGTGAATTTACGCCTTCTCCCAAAAGCATCGTTCTCCGTAGCTTAGTGGTGAGAGCACTGCTCCACAAACGCAGAGGCGTACCTATAGGTTCGATTCATGCCGGAGGAccaaagttgcatttttcgcaacgtTCCCGGTTTGGTCTCAATAATCGTATGTTTCTGCCTTCGTTATCCTAAACCACcatcaacatttaatttatgTTCAAATAAAACGAAGGAAGTGCAATAACcaatatatttcaacatattTGACATTTTTCTAGTTCTTTTTTTTTATGTAAGAGTTATAAACtgagtaggaggtttataactgatatattgaccCGAGAACGCGTAGCGTCcgaggggcaatatatcagttataaaccgactttcgaggtttataactaacttatatcacacttgcggaggttttccaacatattttgtcattttcaaaaatttttaatgaaaaattctcgcgttttgtctacaagtttaatctaatcatttattcaaggtttataagctagttataaacctcggaagaacaaagaaaaccgacgcaagtgtgatataagtttAGTTTTAATAAGGTTGTTTTACGTAGTTCTAAAATTAATTGTTTAACTTTGTACTAATTCGTCCTGTCATCTTTTACACattaatgtttataatttgaaatTCTCAACAAAAGGTTCGTCTCATTTCGCAGCCGATTTCGATATATTCGTTCATTTGTCTCACTAATATATTTCATAACATAACATAAGGAATCATTTTCGTCGTTCTTTTCTGCTTTTCCCCAACTTATTTTTGAGTATTagctaaggggctgtttatatcaTGGAGTAAGGATTGAATAGAGAcgcctcgcgcatgtcgcattacgcattttggccgccattttcctagccagtcaataacattttcggccaataaacacgctgttctggctggctgctccgccttttggccagtaaactgcataatTTTGCATACAAAAACGAGGACACATTGCACCGCTGAGCGTCCCTtttgttactgatctttattctgtttatatggaagccgggctaggccgcttagcaagacagcccggtaagcgggatgaatttctcttctGTTTATactatgagaaaatttcatcccgcttggcgggacaattttgttgttttgacagttgttaaaaatagcttgcagcgGCATcattgaactttcatcccggcaagtGGGTTGGCCTGTTTGTTCATATAAACGCACGATACTTTTTACTATAAAATGAATTACACTGTGAGATCTCGCTAAGCTAGCTAGCCCGGTAAGCAAGCCAGTCCATTCTTCATATGAGtatttatatggagaaattttcatcccggtaagcgagatctcgcctttcTCATGCGCGATCTCTGGAAGCGGGTCAGCCCGTTTATTCACATAAACGCActgtaatccccgagccggcggcgcggagcgccgttcgaggatactaattccgcccggctatttacacccggtgTTCAGTTGAaaacatagcgaagtgcaaTTTGTCCTCCATTATGTGATGGACGGTCTTCGACGTTATTGCGCATGCACGTGTAATAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q923B6	Metalloreductase STEAP4 OS=Mus musculus OX=10090 GN=Steap4 PE=1 SV=1
Q8NFT2	Metalloreductase STEAP2 OS=Homo sapiens OX=9606 GN=STEAP2 PE=1 SV=3
Q4V8K1	Metalloreductase STEAP4 OS=Rattus norvegicus OX=10116 GN=Steap4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009480 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01794 all species →	Ferric_reduct	Ferric reductase like transmembrane component	Family	Interproscan
PF03807 all species →	F420_oxidored	NADP oxidoreductase coenzyme F420-dependent	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051267 all species →	Family	STEAP family metalloreductases	Interproscan
IPR013130 all species →	Domain	Ferric reductase transmembrane component-like domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR028939 all species →	Domain	Pyrroline-5-carboxylate reductase, catalytic, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14239 all species →	DUDULIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008823 all species →	Molecular Function	cupric reductase (NADH) activity	Interproscan
GO:0015677 all species →	Biological Process	copper ion import	Interproscan
GO:0052851 all species →	Molecular Function	ferric-chelate reductase (NADPH) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19876	STEAP4; metalloreductase STEAP4	EC:1.16.1.-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4024266.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

20TPM > 0

4Conditions

71.5Max TPM

26.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	45.24	71.51
apical branchlet · Temperature treatment at T0	6	5	12.99	19.45
apical branchlet · Temperature treatment at T25	5	5	20.16	32.79
apical branchlet · Control at T0	4	4	26.84	41.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	71.51
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	67.00
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	57.80
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	56.65
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	16.58
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.94
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	19.45
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	19.15
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	18.42
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.44
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	8.44
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	32.79
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	24.11
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	20.45
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	17.61
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	5.83
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	41.08
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	37.53
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	25.84
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	2.89

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.