Genomic Location: pcla8_s013597:7967...9297
NR annotation: CAB4024311.1, transcriptional adapter 2-alpha [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| CDS |
| PACLA_8A061528 |
| Transcript |
| rna-PACLA_8A061528 |
| Protein |
| CAB4024311.1 |
| UniProt accession | Description |
|---|---|
| Q3SZP8 | Transcriptional adapter 2-alpha OS=Bos taurus OX=9913 GN=TADA2A PE=2 SV=1 |
| O75478 | Transcriptional adapter 2-alpha OS=Homo sapiens OX=9606 GN=TADA2A PE=1 SV=3 |
| Q6AYE3 | Transcriptional adapter 2-alpha OS=Rattus norvegicus OX=10116 GN=Tada2a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006289 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00249 all species → | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| PF04433 all species → | SWIRM | SWIRM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR007526 all species → | Domain | SWIRM domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR016827 all species → | Family | Transcriptional adaptor 2 | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR017884 all species → | Domain | SANT domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12374 all species → | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0070461 all species → | Cellular Component | SAGA-type complex | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11314 | TADA2A, ADA2; transcriptional adapter 2-alpha | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4024311.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 3.78 | 21.99 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 10.86 | 31.76 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 9.21 | 46.03 | |
| apical branchlet · Control at T0 | 4 | 2 | 2.63 | 6.56 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
