Gene detail

Detailed information of CAB4024437.1 in Paramuricea clavata

Genomic Location: pcla8_s013682:11020...13745
NR annotation: CAB4024437.1, GTP-binding ypt3 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-PACLA_8A058552

tgTTTGCAGATATACTGCcacatttgatatgcaaatgcCCGTCGTTGCGTCTGTATGTTAAAGAAATAGAAAAGGTTTCTCGATGTTTATACAGTTGTAGAAACACGCGTAGGATTTGGGGAGAATAGTAAAAATCAGTGGGAAAACGCCCGAAAGGAGAGATTTTCCAAGTTatttcgagttctcccaaactacaagtgtttgtatatatttgtatagcGTACAcggtaaaaaatattttctattgtttttctACCACAGGTCAAGAAAGATACCGAGCGATAACAAGCGCCTACTACCGAGGAGCCCTGGGTGCTATTGTCGTCTACGATATCACGAGCACGAAGAGTTTCGAGAATATCGACCTATGGATTGACGAATTACGACAACATACGGACGATAAGGTCGTTTTAATGCTTGTAGGTAATAAAGTCGATCTACGTCATTTGCGTGCAGTCGAAAAGGAGACGGCATCCACTTATGCCGcagaaaacaaaatgcattttgtcGAAACTTCGGCACTGAACGCCATGAATGTCGACGTCGCATTCGAGAGCACATTACGCAAGATTTATGAGATTGTAAGAGAACAGGAGAGTGACAGGAATGAACACGAAAATGAACAAGCTACGATGCTGAATACGAAAATGAACGGAGAAAGTTCTGTGCGTTTAAAAGAAGACACAAATGCTGATAAAGGACGGCCATCATGCTGTTCTTAGTAATGATATTGCTCTAAAATTGTACAAATTCGAAGGTTAATAGTCTAATCCGATTTTGTGAATCTTGTATGGCTAAGTGTGTATATTTGATATGtagatgcatgcatgcagtttaTATCTGGAACTAGAACTGCGAGATTAGATTAAATATATACATTCAAATGCAtacattaattaacaattattcgccgaaggcgaggtgattatcggtgaataaaaaccgagacgaagtcgaggtttttattcacgataatcaccgagcctgaggtgaataattgttttagtataatttcataggtgattatttgggaaaaataagaaaatacacatttcttcgtcatttaattgacaaaaaggcttcggccgccattttgaaaatcgcgtaggtgattatcgcgtaataatcacctcaacggcaaccaatcagcgtggagaattttcaataatcacctaagtAATTATACTAATTGCATATAAAGCAAATTTGGTCTGAGATTAAGCCGAATCAAAGGAAACTGCAGAGGGACCTGAGTATATAATTATGTTACATTCACAAAAATTGATAACATGCATAAATGAGTTTTCAGTATATCTACTAGATATTATCTAGGACCGACAATCATGCTCATTTTGCCGCACAAAACATCAAAATGGGTCCGCAGTTttcgctacaacccaccctCCCATGCAGTGCTGAAAATGTCATTAAAATGTTTGACATGAATAAAAATACATCAACCGTGCACTCAACCAATTGCCTCTTAAGAATACAATAATCTATAAATGTCATGTCATTTATGTCCTAAAAACGTGATGTTAATCTCTTTTTGACAGCGCGTAAAgagttttatataataactacagtgaaacacgcaatttgattggtcaatagccgtgcaggatcagactaTCCtacacgaggaattaaaatgccttcgcgggattttcgcgggattctcaaaatgtcattgtttcactgtagttattttataaaacaattaccaaatggttttccaagcaggatagcgtgaccATGCACTtgcgatgttgctcgactttcggaaagtgtaaaaatacactcgcctgcggctcgagtatttttacgctttccgaaagtctcgcgacatccctcgtgcacggatcacgcaatcctgcacggaaaaccattcggtattcctttattaatATCGTACTACACAGATttgtatttaacaaatataaaacatttaaacatgcagttatatcaacatgagtgggaattgggaaaacgagaaattgtgtggcaCAAAGCACAAAATTATGTGGcaatagcacaaagaaatagaaagaaagaaatttcccATGTTGATATTgaattatatcaacacggctcttagccaatcagcgttcagaatttataaatgctatattataattaaattaCAAGAAATTCTCTTCCATCACTTTGCTTTATACCAATTCCACCTACCACGCAAAACGTCAGTCCGTACcatatagatatcttatatacactagatagtgcatctaattattccgcaattcaaaaattgaagccgtgattgcagtctcaggtcgttcccatgagatgagaagattcgtatgttttctatttcttaaacagagaacttaaacattaagttaaccctattccaaatatgcttttaaactattcaaatgatgaaagctattgttgtttttaagcgtttattagcaagtgggaacgaccaacatggccgccatctattcaaatgggggtaaccgctggaatattattggcttcaattttactaaaagagatgcgctatctagtgtagtaagatatctatggtccgTACCCACCCAGTCGTTTTTTGAGTGGCAAAATGAGTATGGACGAATTGTCCTTTAGTGCTGGTTAATAGAAATGAAAGACTATTAAATTAGAATTGCGAGAAAGAGGCTTGCATTTATATTACACTTTAAAATTAAAGCCCACTATGATGAAAGAAACGTCCATAATGCAAA

Protein

Uniprot

Uniprot term	Description
P17610	GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ypt3 PE=1 SV=1
P62490	Ras-related protein Rab-11A OS=Canis lupus familiaris OX=9615 GN=RAB11A PE=2 SV=3
Q5ZJN2	Ras-related protein Rab-11A OS=Gallus gallus OX=9031 GN=RAB11A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47978	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan