Genomic Location: not available for this species
NR annotation: CAB4025024.1, ranBP-type and C3HC4-type zinc finger-containing 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4025024.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q62921 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Rbck1 PE=1 SV=3 |
| Q9WUB0 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Rbck1 PE=1 SV=2 |
| Q9BYM8 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=RBCK1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003398 (this species only) |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01485 all species → | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| PF13639 all species → | zf-RING_2 | Ring finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR002867 all species → | Domain | IBR domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR044066 all species → | Domain | TRIAD supradomain | Interproscan |
| IPR047559 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass | Interproscan |
| IPR051628 all species → | Family | Linear Ubiquitination-Associated E3 Ligases | Interproscan |
| IPR047558 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22770 all species → | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0000151 all species → | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0097039 all species → | Biological Process | protein linear polyubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10630 | RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1 | EC:2.3.2.31 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB4025024.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 9.11 | 20.25 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 12.57 | 29.40 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 2.12 | 7.42 | |
| apical branchlet · Control at T0 | 4 | 2 | 8.87 | 18.34 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
