Detailed information of CAB4025387.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4025387.1, recombining binding suppressor of hairless isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB4025387.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q06330Recombining binding protein suppressor of hairless OS=Homo sapiens OX=9606 GN=RBPJ PE=1 SV=3
Q5RFK6Recombining binding protein suppressor of hairless OS=Pongo abelii OX=9601 GN=RBPJ PE=2 SV=1
Q3SZ41Recombining binding protein suppressor of hairless OS=Bos taurus OX=9913 GN=RBPJ PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003006 (this species only)

 Pfam domain
No Pfam domain signature was detected for CAB4025387.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR037095
all species →		Homologous_superfamilyRBP-J/Cbf11, DNA binding domain superfamilyInterproscan
IPR008967
all species →		Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan
IPR040159
all species →		FamilySuppressor of hairless-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10665
all species →		RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0001228
all species →		Molecular FunctionDNA-binding transcription activator activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB4025387.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4025387.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
10TPM > 0
4Conditions
74.4Max TPM
12.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 4 18.43 74.40
apical branchlet · Temperature treatment at T0 6 3 11.26 55.47
apical branchlet · Temperature treatment at T25 5 2 14.18 68.20
apical branchlet · Control at T0 4 1 1.84 7.38

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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