Genomic Location: not available for this species
NR annotation: CAB4025797.1, RNA cytidine acetyltransferase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4025797.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9H0A0 | RNA cytidine acetyltransferase OS=Homo sapiens OX=9606 GN=NAT10 PE=1 SV=2 |
| Q8K224 | RNA cytidine acetyltransferase OS=Mus musculus OX=10090 GN=Nat10 PE=1 SV=1 |
| P53914 | RNA cytidine acetyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRE33 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003822 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13718 all species → | GNAT_acetyltr_2 | GNAT acetyltransferase 2 | Family | Interproscan |
| PF08351 all species → | TmcA_N | tRNA(Met) cytidine acetyltransferase TmcA, N-terminal | Family | Interproscan |
| PF05127 all species → | Helicase_RecD | Helicase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR032672 all species → | Family | TmcA/NAT10/Kre33 | Interproscan |
| IPR000182 all species → | Domain | GNAT domain | Interproscan |
| IPR013562 all species → | Domain | tRNA(Met) cytidine acetyltransferase TmcA, N-terminal | Interproscan |
| IPR007807 all species → | Domain | Helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10925 all species → | N-ACETYLTRANSFERASE 10 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0008080 all species → | Molecular Function | N-acetyltransferase activity | Interproscan |
| GO:0030686 all species → | Cellular Component | 90S preribosome | Interproscan |
| GO:1904812 all species → | Biological Process | rRNA acetylation involved in maturation of SSU-rRNA | Interproscan |
| GO:1990883 all species → | Molecular Function | rRNA cytidine N-acetyltransferase activity | Interproscan |
| GO:0016747 all species → | Molecular Function | acyltransferase activity, transferring groups other than amino-acyl groups | Interproscan |
CAB4025797.1.Transcript abundance of CAB4025797.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
